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Page 1
Computational Modeling of DNA 3D Structures: From Dynamics and Mechanics to Folding.
Molecules. 2023 Jun 17;28(12):4833. doi: 10.3390/molecules28124833.
Molecules. 2023.
PMID: 37375388
Free PMC article.
Review.
RNAStat: An Integrated Tool for Statistical Analysis of RNA 3D Structures.
Guo ZH, Yuan L, Tan YL, Zhang BG, Shi YZ.
Guo ZH, et al. Among authors: zhang bg.
Front Bioinform. 2022 Jan 11;1:809082. doi: 10.3389/fbinf.2021.809082. eCollection 2021.
Front Bioinform. 2022.
PMID: 36303785
Free PMC article.
Item in Clipboard
Ab initio predictions for 3D structure and stability of single- and double-stranded DNAs in ion solutions.
Mu ZC, Tan YL, Zhang BG, Liu J, Shi YZ.
Mu ZC, et al. Among authors: zhang bg.
PLoS Comput Biol. 2022 Oct 19;18(10):e1010501. doi: 10.1371/journal.pcbi.1010501. eCollection 2022 Oct.
PLoS Comput Biol. 2022.
PMID: 36260618
Free PMC article.
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Detecting causality from short time-series data based on prediction of topologically equivalent attractors.
Zhang BG, Li W, Shi Y, Liu X, Chen L.
Zhang BG, et al.
BMC Syst Biol. 2017 Dec 21;11(Suppl 7):128. doi: 10.1186/s12918-017-0512-3.
BMC Syst Biol. 2017.
PMID: 29322924
Free PMC article.
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ABC2A: A Straightforward and Fast Method for the Accurate Backmapping of RNA Coarse-Grained Models to All-Atom Structures.
Shi YZ, Wu H, Li SS, Li HZ, Zhang BG, Tan YL.
Shi YZ, et al. Among authors: zhang bg.
Molecules. 2024 Mar 11;29(6):1244. doi: 10.3390/molecules29061244.
Molecules. 2024.
PMID: 38542881
Free PMC article.
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3D structure stability of the HIV-1 TAR RNA in ion solutions: A coarse-grained model study.
Zhang BG, Qiu HH, Jiang J, Liu J, Shi YZ.
Zhang BG, et al.
J Chem Phys. 2019 Oct 28;151(16):165101. doi: 10.1063/1.5126128.
J Chem Phys. 2019.
PMID: 31675878
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