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Status
Public on Aug 04, 2006
Title
HeLa, mock, 24 hr vs. HeLa, SOD1 SNP at position 7
Sample type
RNA
Channel 1 Source name
HeLa cells
Organism
Homo sapiens Characteristics
Cells transfected with siRNA to SOD1, SNP at position 7
Extracted molecule
total RNA
Label
Cy3/Cy5 (fluor-reversed pair)
Channel 2 Source name
HeLa cells
Organism
Homo sapiens Characteristics
Cells mock-transfected
Extracted molecule
total RNA
Label
Cy5/Cy3 (fluor-reversed pair)
Description
For details please see: Dianne S. Schwarz, Hongliu Ding, Lori Kennington,
Data processing
custom
Submission date
Jul 11, 2006
Last update date
Aug 03, 2006
Contact name
Julja Burchard
Organization name
Merck & Co., Inc.
Department
Computational & Systems Biology
Street address
33 Avenue Louis Pasteur
City
Boston
State/province
MA
ZIP/Postal code
02176
Country
USA
Platform ID
GPL3992 Series (1)
GSE5291 Designing siRNA that distinguish between genes that differ by a single nucleotide
Data table header descriptions ID_REF VALUE MLRATIO: Averaged log10 ratio [log10(CHANNEL1/CHANNEL2), error weighted]
LOGINTENSITY Average log intensity of channels
PVALUE Significance of MLRATIO (VALUE)
MLRATIOERROR Error estimate for MLRATIO (VALUE)
Data table ID_REF VALUE LOGINTENSITY PVALUE MLRATIOERROR 10023804644
0.18952
-1.95806
5.151519e-001
2.911938e-001
10023804645
-0.06934
0.06922
1.899291e-001
5.289819e-002
10023804646
0.01987
-0.50998
6.933215e-001
5.038399e-002
10023804647
0.00583
-1.70676
9.653926e-001
1.343065e-001
10023804648
0.05883
-0.67919
2.443549e-001
5.052954e-002
10023804649
0.03396
-1.55769
6.833991e-001
8.326434e-002
10023804650
0.15426
-1.83771
3.768950e-001
1.745695e-001
10023804651
-0.03645
-0.09282
4.659048e-001
4.998807e-002
10023804652
-0.01094
-0.98445
8.171034e-001
4.731475e-002
10023804653
0.05972
-1.69820
6.177340e-001
1.196539e-001
10023804654
0.09415
-2.07017
5.824093e-001
1.712310e-001
10023804655
0.04244
-0.12744
4.567167e-001
5.702456e-002
10023804656
-0.05754
0.57264
2.287288e-001
4.780629e-002
10023804657
-0.03683
-0.21492
4.269158e-001
4.635794e-002
10023804658
0.12381
-2.12867
5.367115e-001
2.004032e-001
10023804659
-0.00416
0.48865
9.342218e-001
5.037296e-002
10023804660
-0.02997
-1.41744
6.098754e-001
5.873671e-002
10023804661
0.07248
-0.81998
1.955525e-001
5.599958e-002
10023804662
0.09578
1.04251
1.188050e-001
6.140374e-002
10023804663
-0.01231
-1.24580
8.587829e-001
6.918558e-002
23345 1307 Kbytes .Supplementary file Size Download File type/resource GSM119743.251145449489.txt.gz
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GSM119743.251145449490.txt.gz
612.9 Kb
(ftp) (http) TXT
