ODLS 2016
Ontologies and Data in Life Sciences

Table of Contents

• Preface i–viii
  (including title page, imprint, organizers, program committee, authors, keynote speakers and keynote abstracts, program and table of contents)
  
  

Papers

• Deep Learning meets Semantic Web: A feasibility study with the Cardiovascular Disease Ontology and PubMed citations A.1–6
  Mercedes Argüello Casteleiro, George Demetriou, Warren J. Read, Maria Jesus Fernandez Prieto, Diego Maseda-Fernandez, Goran Nenadic, Julie Klein, John A. Keane, Robert Stevens
• A document-centric approach for developing the tolAPC Ontology B.1–6
  Aisha Blfgeh, Jennifer D. Warrender, Catharien M. U. Hilkens, Phillip Lord
• Challenges and opportunities for system biology standards and tools in medical research C.1–6
  Matthias König, Anika Oellrich, Dagmar Waltemath, Richard J. B. Dobson, Tim J. P. Hubbard, Olaf Wolkenhauer
• Querying standardized EHRs by a Search Ontology XML extension (SOX) D.1–5
  Stefan Kropf, Alexandr Uciteli, Peter Krücken, Kerstin Denecke, Heinrich Herre
• Towards standardized evidence descriptors for metabolite annotations E.1–5
  Daniel Schober, Reza M. Salek, Steffen Neumann
• A Whiteheadian approach to data and knowledge F.1–6
  Sebastian Siemoleit, Heinrich Herre
• Risk Identification Ontology (RIO): An ontology for specification and identification of perioperative risks G.1–7
  Alexandr Uciteli, Juliane Neumann, Kais Tahar, Kutaiba Saleh, Stephan Stucke, Sebastian Faulbrück-Röhr, André Kaeding, Martin Specht, Tobias Schmidt, Thomas Neumuth, Andreas Besting, Frank Portheine, Heinrich Herre
  
  

Extended Abstracts

• A modelling pattern for multi-track dispositions for life-science ontologies H.1–2
  Adrien Barton, Ludger Jansen
• FAIRDOM approach for semantic interoperability of systems biology data and models I.1–2
  Olga Krebs, Katy Wolstencroft, Natalie J. Stanford, Norman Morrison, Martin Golebiewski, Rostyk Kuzyakiv, Stuart Owen, Quyen Nguyen, Jacky L. Snoep, Wolfgang Mueller, Carole A. Goble
• MeTMapS – Medical Terminology Mapping System J.1–2
  Shao Fen Liang, Jean-François Ethier, Talya Porat, Archana Tapuria, Brendan C. Delaney, Vasa Curcin
• Qualitative assessment of annotations using SNOMED CT K.1–2
  José Antonio Miñarro-Giménez, Catalina Martínez-Costa, Stefan Schulz
• Extracting process graphs from medical text data L.1–2
  Andreas Niekler
• Ontological interpretation of biomedical database annotations M.1–2
  Filipe Santana da Silva, Ludger Jansen, Fred Freitas, Stefan Schulz